School and Conference: From Biological Networks to Cellular Function: Evolution, Dynamics and Spatial Organization

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Announcement Poster Final List Participants

School and Conference: From Biological Networks to Cellular Function: Evolution, Dynamics and Spatial Organization | (smr 2041)

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Monday, 8 June 2009

09:00 - 10:00 REGISTRATION

Location: Leonardo da Vinci Building, Lobby
- 09:00 REGISTRATION 1h0'

10:00 - 11:00 Complex networks of biomolecular interactions and chromosome architecture

10:00 Complex networks of biomolecular interactions and chromosome architecture 1h0'

Speaker:	F. KEPES
Material:	Presentation

11:00 - 11:30 Coffee break
- 11:00 Coffee break 30'
11:30 - 12:30 Complex networks of biomolecular interactions and chromosome architecture
- 11:30 Complex networks of biomolecular interactions and chromosome architecture 1h0'
  
  Speaker: F. KEPES
12:30 - 14:00 Lunch
- 12:30 Lunch 1h30'
14:00 - 15:00 Complex networks of biomolecular interactions and chromosome architecture
- 14:00 Complex networks of biomolecular interactions and chromosome architecture 1h0'
  
  Speaker: F. KEPES
15:00 - 16:00 Introduction to the dynamics and evolution of metabolic networks
- 15:00 Introduction to the dynamics and evolution of metabolic networks 1h0'
  
  Speaker: D. SEGRE
16:00 - 16:30 Coffee break
- 16:00 Coffee break 30'
16:30 - 17:30 Introduction to the dynamics and evolution of metabolic networks
- 16:30 Introduction to the dynamics and evolution of metabolic networks 1h0'
  
  Speaker: D. SEGRE

Tuesday, 9 June 2009

09:00 - 10:00 Introduction to the dynamics and evolution of metabolic networks
- 09:00 Introduction to the dynamics and evolution of metabolic networks 1h0'
  
  Speaker: D. SEGRE
10:00 - 11:00 Introduction to biological evolution
- 10:00 Introduction to biological evolution 1h0'
  
  Speaker: M. LAESSIG
11:00 - 11:30 Coffee break
- 11:00 Coffee break 30'
11:30 - 12:30 Introduction to biological evolution
- 11:30 Introduction to biological evolution 1h0'
  
  Speaker: M. LAESSIG
12:30 - 14:00 Lunch
- 12:30 Lunch 1h30'

14:00 - 15:00 Some principles of molecular evolution

14:00 Some principles of molecular evolution 1h0'

Speaker:	A. WAGNER
Material:	Presentation

15:00 - 16:00 Some principles of molecular evolution
- 15:00 Some principles of molecular evolution 1h0'
  
  Speaker: A. WAGNER
16:00 - 16:30 Coffee break
- 16:00 Coffee break 30'
16:30 - 17:30 Complex networks of biomolecular interactions and chromosome architecture
- 16:30 Complex networks of biomolecular interactions and chromosome architecture 1h0'
  
  Speaker: F. KEPES
19:30 - 21:30 RECEPTION
- 19:30 RECEPTION 2h0'

Wednesday, 10 June 2009

08:30 - 09:00 REGISTRATION

Location: Leonardo da Vinci Building, Lobby
- 08:30 REGISTRATION 30'
09:00 - 09:40 Artificial Regulatory Networks
- 09:00 Artificial Regulatory Networks 40'
  
  Speaker: W. BANZHAF

09:40 - 10:20 Integration of Experiments and Metabolic Modeling Facilitate Network Design & Biological Discovery

09:40 Integration of Experiments and Metabolic Modeling Facilitate Network Design & Biological Discovery 40'

Speaker:	J. REED
Material:	abstract

10:20 - 11:00 On the relationship between robustness and evolutionary innovation
- 10:20 On the relationship between robustness and evolutionary innovation 40'
  
  Speaker: A. WAGNER
11:00 - 11:30 Coffee break
- 11:00 Coffee break 30'
11:30 - 12:10 Individual histories and selection in population dynamics
- 11:30 Individual histories and selection in population dynamics 40'
  
  Speaker: E. KUSELL
12:10 - 12:50 The impact of alterations in genomic neighbourhood on human evolution
- 12:10 The impact of alterations in genomic neighbourhood on human evolution 40'
  
  Speaker: M. BABU
12:50 - 14:20 Lunch
- 12:50 Lunch 1h30'
14:20 - 15:00 TBA
- 14:20 TBA 40'
  
  Speaker: R. ZECCHINA
15:00 - 15:40 Biological strategies of motility
- 15:00 Biological strategies of motility 40'
  
  Speaker: M. VERGASSOLA

15:40 - 16:20 About preservation of properties along embedding of biological regulatory networks

15:40 About preservation of properties along embedding of biological regulatory networks 40'

Speaker:	M. MABROUKI
Material:	abstract

16:20 - 16:40 Coffee break
- 16:20 Coffee break 20'
16:40 - 17:20 Neutral networks and evolutionary dynamics
- 16:40 Neutral networks and evolutionary dynamics 40'
  
  Speaker: O. MARTIN

17:20 - 18:00 The specificity of bacterial protein-protein interactions & the inverse Potts problem

17:20 The specificity of bacterial protein-protein interactions & the inverse Potts problem 40'

Speaker:	A. PROCACCINI
Material:	abstract

Thursday, 11 June 2009

09:00 - 09:40 Modeling nucleosome mediated epigenetics and gene regulation
- 09:00 Modeling nucleosome mediated epigenetics and gene regulation 40'
  
  Speaker: K. SNEPPEN

09:40 - 10:20 Modeling the circadian clock: From molecular mechanism to physiological disorders

09:40 Modeling the circadian clock: From molecular mechanism to physiological disorders 40'

Speaker:	J.-C. LELOUP
Material:	abstract

10:20 - 11:00 Laws of prokaryotic genome evolution

10:20 Laws of prokaryotic genome evolution 40'

Speaker:	E. VAN NIMWEGEN
Material:	abstract

11:00 - 11:30 Coffee break
- 11:00 Coffee break 30'

11:30 - 12:10 "Home depot" model of evolution of prokaryotic metabolic networks and their regulation

11:30 "Home depot" model of evolution of prokaryotic metabolic networks and their regulation 40'

Speaker:	S. MASLOV
Material:	abstract

12:10 - 12:50 Modeling large-scale metabolic networks: Structure, Function and Evolution
- 12:10 Modeling large-scale metabolic networks: Structure, Function and Evolution 40'
  
  Speaker: O. EBENHOEH
12:50 - 14:20 Lunch
- 12:50 Lunch 1h30'
14:20 - 15:00 Structure and Boolean dynamics of E. coli's genetic regulatory network: Origin of homeostasis and flexibility of response
- 14:20 Structure and Boolean dynamics of E. coli's genetic regulatory network: Origin of homeostasis and flexibility of response 40'
  
  Speaker: S. JAIN
15:00 - 15:40 Adaptive Environmental Conditioning: Prediction of Environmental Changes by Micro-Organisms
- 15:00 Adaptive Environmental Conditioning: Prediction of Environmental Changes by Micro-Organisms 40'
  
  Speaker: A. MITCHELL
15:40 - 16:20 Network ensembles and the definition of priors in genetic network inference problems
- 15:40 Network ensembles and the definition of priors in genetic network inference problems 40'
  
  Speaker: G. BIANCONI
16:20 - 16:40 Coffee break
- 16:20 Coffee break 20'

16:40 - 17:20 Calibration of a genetic network model for maternal and gap genes in Drosophila

16:40 Calibration of a genetic network model for maternal and gap genes in Drosophila 40'

Speaker:	D. MURARO
Material:	abstract

17:20 - 18:00 Transcriptional regulation: consequences on chromosome structuring and genome organization
- 17:20 Transcriptional regulation: consequences on chromosome structuring and genome organization 40'
  
  Speaker: I. JUNIER

Friday, 12 June 2009

09:00 - 09:40 Analysis of the spatial organization of the bacterial chromosome

09:00 Analysis of the spatial organization of the bacterial chromosome 40'

Speaker:	O. ESPELI
Material:	abstract

09:40 - 10:20 Spectrally Assigned Localization Microscopy: A new lightoptical approach to study chromosome geometry on the nanoscale

09:40 Spectrally Assigned Localization Microscopy: A new lightoptical approach to study chromosome geometry on the nanoscale 40'

Speaker:	C. CREMER
Material:	abstract

10:20 - 11:00 Coarse-grained Simulations of DNA knotting in conned geometries

10:20 Coarse-grained Simulations of DNA knotting in conned geometries 40'

Speaker:	C. MICHELETTI
Material:	abstract

11:00 - 11:30 Coffee break
- 11:00 Coffee break 30'

11:30 - 12:10 Viable flux states in metabolic networks: a statistical physics perspective

11:30 Viable flux states in metabolic networks: a statistical physics perspective 40'

Speaker:	A. DE MARTINO
Material:	abstract

12:10 - 12:50 Modeling nucleosome mediated epigenetics and gene regulation
- 12:10 Modeling nucleosome mediated epigenetics and gene regulation 40'
  
  Speaker: D. FERNANDEZ
12:50 - 14:20 Lunch
- 12:50 Lunch 1h30'