Scientific Calendar Event



Description Link to ICTP ICTS web page: https://www.icts.res.in/program/QSB2023

Cells are the basic units of all living matter. They harness energy flows to drive biological functions. Most bio-chemical networks involved in energy transduction are nowadays well-characterized. However, the energetic costs and constraints for specific cellular processes remain largely unknown. In particular, what are the energy budgets of cells? What are the constraints and limits energy flows impose on cellular processes? Do cells operate near these limits, and, if so, how do energetic constraints impact cellular functions? Physics has provided poweerful tools to study nonequilibrium systems and to define these physical limits, but applying these tools to cell biology remains a challenge. Physical bioenergetics resides at the interface of nonequilibrium physics, energy metabolism, and cell biology. It seeks to understand how much energy cells use, how they partition this energy between different cellular processes, and the associated energetic constraints. In this School, we shall review the state of the art in physical bioenergetics with an aim to discuss and articulate open questions and future challenges.
 
This is the twelfth school in the series on Quantitative Systems Biology, held alternately at Trieste and Bangalore. The school responds to the strong need, especially at the Ph.D. and postdoc level, for providing scientists with a broad exposure to quantitative problems in the study of living systems. The audience will range from Ph.D. students to young faculty, who either work in this area or plan to do so.  
 
The aim of QSB2023 will be to allow students from different backgrounds to become familiar with exciting developments at the interface of physics, bioenergetics, and cellular metabolism. Starting with an overview of cellular bioenergetics, biochemistry and metabolism, the students will be exposed to contemporary research areas covering a broad range of topics, including energetics of mechano-chemical processes, active matter and biological processes such as cellular growth, function and organismal development.

SCIENTIFIC ADVISORY COMMITTEE:
Vijay BALASUBRAMANIAM, University of Pennsylvania, USA
Antonio CELANI, ICTP Trieste, Italy
Sanjay JAIN, University of Delhi, India
Vijay KRISHNAMURTHY, ICTS, India
Matteo MARSILI, ICTP Trieste, Italy
Mukund THATTAI, NCBS, India

Lecturers include:
Amitesh ANAND, DBS-TIFR, India
Vaishnavi ANANTHANARAYANAN, University of New South Wales, Australia
Massimiliano ESPOSITO, University of Luxembourg, Luxembourg
Sunil LAXMAN, inStem, Bengaluru, India
Michael LYNCH, Arizona State University, USA
Jonathan RODENFELS, MPI-CBG, Germany
Pablo SARTORI, Instituto Gulbenkian de Ciência, Portugal
Xingbo YANG, Harvard University, USA
 
 
Eligibility criteria: Scientists and students from all over the world can apply for the School. Researchers from developing countries are particularly encouraged to apply. As the program will be conducted in English, participants should have an adequate working knowledge of this language.
 
The school will not have an online component.

Grants: A limited number of grants are available to support the attendance of selected participants, with priority given to participants from developing countries. There is no registration fee.
 
Go to day
  • Monday, 4 December 2023
    • 04:45 - 11:00
      The following is the YouTube playlist link with the lecture videos
      • 04:45 Welcome remarks  15'
        Speaker: Rajesh Gopakumar (ICTS, India)
      • 05:00 Energetics of embryonic development  1h30'
        Speaker: Jonathan Rodenfels (MPI-CBG, Germany)
      • 06:30 Break 30'
      • 07:00 Cell metabolism as an economy - what control strategies do cells use, and how to identify what is at play  1h30'
        Speaker: Sunil Laxman (inStem, India)
      • 08:30 Lunch 1h0'
      • 09:30 Active matter theory and cytoskeletal dynamics  1h30'
        Speaker: Xingbo Yang (Harvard University, USA)
  • Tuesday, 5 December 2023
    • 05:00 - 11:00
      The following is the YouTube playlist link with the lecture videos
      • 05:00 Basics and applications in developmental energetics/metabolism  1h30'
        Speaker: Jonathan Rodenfels (MPI-CBG, Germany)
      • 06:30 Break 30'
      • 07:00 Ideas on Self-organization of metabolic networks, how it can lead to division of metabolic labor  1h30'
        Speaker: Sunil Laxman (inStem, India)
      • 08:30 Lunch 1h0'
      • 09:30 Measurement of spatiotemporal cell metabolism (imaging)  1h30'
        Speaker: Xingbo Yang (Harvard University, USA)
  • Wednesday, 6 December 2023
    • 05:00 - 11:00
      The following is the YouTube playlist link with the lecture videos
      • 05:00 Cellular growth as a non-equilibrium chemical process  1h30'
        Speaker: Pablo Sartori (IGC, Portugal)
      • 06:30 Break 30'
      • 07:00 Posters  1h30'
      • 08:30 Lunch 1h0'
      • 09:30 Posters  1h30'
  • Thursday, 7 December 2023
    • 05:00 - 11:00
      The following is the YouTube playlist link with the lecture videos
      • 05:00 Energetic cost estimates  1h30'
        Speaker: Jonathan Rodenfels (MPI-CBG, Germany)
      • 06:30 Break 30'
      • 07:00 Biomass thermodynamics: entropy and enthalpy of biomass, what it is and how to estimate it  1h30'
        Speaker: Pablo Sartori (IGC, Portugal)
      • 08:30 Lunch 1h0'
      • 09:30 Coarse-grained metabolic modeling and flux control  1h30'
        Speaker: Xingbo Yang (Harvard University, USA)
  • Friday, 8 December 2023
    • 05:00 - 11:00
      The following is the YouTube playlist link with the lecture videos
      • 05:00 How to measure metabolic/energetic parameters  1h30'
        Speaker: Jonathan Rodenfels (MPI-CBG, Germany)
      • 06:30 Break 3h0'
      • 09:30 Yield and dissipation across and within metabolic types  1h30'
        Speaker: Pablo Sartori (IGC, Portugal)
  • Monday, 11 December 2023
    • 05:00 - 11:00
      The following is the YouTube playlist link with the lecture videos
      • 05:00 Redox centers and electron flow  1h30'
        Speaker: Amitesh Anand (TIFR, India)
      • 06:30 Break 30'
      • 07:00 Dynamics and thermodynamics  1h30'
        Speaker: Massimiliano Esposito (University of Luxembourg, Germany)
      • 08:30 Lunch 1h0'
      • 09:30 Round table  1h30'
  • Tuesday, 12 December 2023
    • 05:00 - 11:00
      The following is the YouTube playlist link with the lecture videos
      • 05:00 Resource partitioning and energy metabolism  1h30'
        Speaker: Amitesh Anand (TIFR, India)  (TIFR, India)
      • 06:30 Break 30'
      • 07:00 Using topology: fundamental forces and nonequilibrium potentials  1h30'
        Speaker: Massimiliano Esposito (University of Luxembourg, Germany)
      • 08:30 Lunch 1h0'
      • 09:30 Career Session  1h30'
  • Wednesday, 13 December 2023
    • 05:00 - 11:00
      The following is the YouTube playlist link with the lecture videos
      • 05:00 Drift, mutation, and evolution  1h30'
        Online
        Speaker: Michael Lynch (Arizona State University, USA)
      • 06:30 Break 30'
      • 07:00 Metabolic organization - challenges and rules in growth or survival programs  1h30'
        Speaker: Sunil Laxman (inStem, India)
      • 08:30 Lunch 1h0'
      • 09:30 Bioenergetic plasticity and pathogenesis  1h30'
        Speaker: Amitesh Anand (TIFR, India)
  • Thursday, 14 December 2023
    • 05:00 - 11:00
      The following is the YouTube playlist link with the lecture videos
      • 05:00 The bioenergetics costs of building and maintaining cells and cell parts  1h30'
        Online
        Speaker: Michael Lynch (Arizona State University, USA)
      • 06:30 Break 30'
      • 07:00 Energy transduction, circuit theory, and metabolism  1h30'
        Speaker: Massimiliano Esposito (University of Luxembourg, Germany)
      • 08:30 Lunch 1h0'
      • 09:30 Attendee talks  1h30'
  • Friday, 15 December 2023
    • 05:00 - 11:00
      The following is the YouTube playlist link with the lecture videos
      • 05:00 Thermodynamics of Chemical Reaction Networks: From Basic Principles to Metabolism 1h30'
        Speaker: Francesco Avanzini (University of Padua, Italy)
      • 06:30 Break 30'
      • 07:00 Attendee talks  1h30'
      • 08:30 Lunch 1h0'
      • 09:30 Round table/ Closing remarks 1h30'