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School and Conference: From Biological Networks to Cellular Function: Evolution, Dynamics and Spatial Organization | (smr 2041)
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  • Monday, 8 June 2009
    • 09:00 - 10:00 REGISTRATION
      Location: Leonardo da Vinci Building, Lobby
      • 09:00 REGISTRATION 1h0'
    • 10:00 - 11:00 Complex networks of biomolecular interactions and chromosome architecture
      • 10:00 Complex networks of biomolecular interactions and chromosome architecture 1h0'
        Speaker: F. KEPES
        Material: Presentation
    • 11:00 - 11:30 Coffee break
      • 11:00 Coffee break 30'
    • 11:30 - 12:30 Complex networks of biomolecular interactions and chromosome architecture
      • 11:30 Complex networks of biomolecular interactions and chromosome architecture 1h0'
        Speaker: F. KEPES
    • 12:30 - 14:00 Lunch
      • 12:30 Lunch 1h30'
    • 14:00 - 15:00 Complex networks of biomolecular interactions and chromosome architecture
      • 14:00 Complex networks of biomolecular interactions and chromosome architecture 1h0'
        Speaker: F. KEPES
    • 15:00 - 16:00 Introduction to the dynamics and evolution of metabolic networks
      • 15:00 Introduction to the dynamics and evolution of metabolic networks 1h0'
        Speaker: D. SEGRE
    • 16:00 - 16:30 Coffee break
      • 16:00 Coffee break 30'
    • 16:30 - 17:30 Introduction to the dynamics and evolution of metabolic networks
      • 16:30 Introduction to the dynamics and evolution of metabolic networks 1h0'
        Speaker: D. SEGRE
  • Tuesday, 9 June 2009
    • 09:00 - 10:00 Introduction to the dynamics and evolution of metabolic networks
      • 09:00 Introduction to the dynamics and evolution of metabolic networks 1h0'
        Speaker: D. SEGRE
    • 10:00 - 11:00 Introduction to biological evolution
      • 10:00 Introduction to biological evolution 1h0'
        Speaker: M. LAESSIG
    • 11:00 - 11:30 Coffee break
      • 11:00 Coffee break 30'
    • 11:30 - 12:30 Introduction to biological evolution
      • 11:30 Introduction to biological evolution 1h0'
        Speaker: M. LAESSIG
    • 12:30 - 14:00 Lunch
      • 12:30 Lunch 1h30'
    • 14:00 - 15:00 Some principles of molecular evolution
      • 14:00 Some principles of molecular evolution 1h0'
        Speaker: A. WAGNER
        Material: Presentation
    • 15:00 - 16:00 Some principles of molecular evolution
      • 15:00 Some principles of molecular evolution 1h0'
        Speaker: A. WAGNER
    • 16:00 - 16:30 Coffee break
      • 16:00 Coffee break 30'
    • 16:30 - 17:30 Complex networks of biomolecular interactions and chromosome architecture
      • 16:30 Complex networks of biomolecular interactions and chromosome architecture 1h0'
        Speaker: F. KEPES
    • 19:30 - 21:30 RECEPTION
      • 19:30 RECEPTION 2h0'
  • Wednesday, 10 June 2009
    • 08:30 - 09:00 REGISTRATION
      Location: Leonardo da Vinci Building, Lobby
      • 08:30 REGISTRATION 30'
    • 09:00 - 09:40 Artificial Regulatory Networks
      • 09:00 Artificial Regulatory Networks 40'
        Speaker: W. BANZHAF
    • 09:40 - 10:20 Integration of Experiments and Metabolic Modeling Facilitate Network Design & Biological Discovery
      • 09:40 Integration of Experiments and Metabolic Modeling Facilitate Network Design & Biological Discovery 40'
        Speaker: J. REED
        Material: abstract
    • 10:20 - 11:00 On the relationship between robustness and evolutionary innovation
      • 10:20 On the relationship between robustness and evolutionary innovation 40'
        Speaker: A. WAGNER
    • 11:00 - 11:30 Coffee break
      • 11:00 Coffee break 30'
    • 11:30 - 12:10 Individual histories and selection in population dynamics
      • 11:30 Individual histories and selection in population dynamics 40'
        Speaker: E. KUSELL
    • 12:10 - 12:50 The impact of alterations in genomic neighbourhood on human evolution
      • 12:10 The impact of alterations in genomic neighbourhood on human evolution 40'
        Speaker: M. BABU
    • 12:50 - 14:20 Lunch
      • 12:50 Lunch 1h30'
    • 14:20 - 15:00 TBA
      • 14:20 TBA 40'
        Speaker: R. ZECCHINA
    • 15:00 - 15:40 Biological strategies of motility
      • 15:00 Biological strategies of motility 40'
        Speaker: M. VERGASSOLA
    • 15:40 - 16:20 About preservation of properties along embedding of biological regulatory networks
      • 15:40 About preservation of properties along embedding of biological regulatory networks 40'
        Speaker: M. MABROUKI
        Material: abstract
    • 16:20 - 16:40 Coffee break
      • 16:20 Coffee break 20'
    • 16:40 - 17:20 Neutral networks and evolutionary dynamics
      • 16:40 Neutral networks and evolutionary dynamics 40'
        Speaker: O. MARTIN
    • 17:20 - 18:00 The specificity of bacterial protein-protein interactions & the inverse Potts problem
      • 17:20 The specificity of bacterial protein-protein interactions & the inverse Potts problem 40'
        Speaker: A. PROCACCINI
        Material: abstract
  • Thursday, 11 June 2009
    • 09:00 - 09:40 Modeling nucleosome mediated epigenetics and gene regulation
      • 09:00 Modeling nucleosome mediated epigenetics and gene regulation 40'
        Speaker: K. SNEPPEN
    • 09:40 - 10:20 Modeling the circadian clock: From molecular mechanism to physiological disorders
      • 09:40 Modeling the circadian clock: From molecular mechanism to physiological disorders 40'
        Speaker: J.-C. LELOUP
        Material: abstract
    • 10:20 - 11:00 Laws of prokaryotic genome evolution
      • 10:20 Laws of prokaryotic genome evolution 40'
        Speaker: E. VAN NIMWEGEN
        Material: abstract
    • 11:00 - 11:30 Coffee break
      • 11:00 Coffee break 30'
    • 11:30 - 12:10 "Home depot" model of evolution of prokaryotic metabolic networks and their regulation
      • 11:30 "Home depot" model of evolution of prokaryotic metabolic networks and their regulation 40'
        Speaker: S. MASLOV
        Material: abstract
    • 12:10 - 12:50 Modeling large-scale metabolic networks: Structure, Function and Evolution
      • 12:10 Modeling large-scale metabolic networks: Structure, Function and Evolution 40'
        Speaker: O. EBENHOEH
    • 12:50 - 14:20 Lunch
      • 12:50 Lunch 1h30'
    • 14:20 - 15:00 Structure and Boolean dynamics of E. coli's genetic regulatory network: Origin of homeostasis and flexibility of response
      • 14:20 Structure and Boolean dynamics of E. coli's genetic regulatory network: Origin of homeostasis and flexibility of response 40'
        Speaker: S. JAIN
    • 15:00 - 15:40 Adaptive Environmental Conditioning: Prediction of Environmental Changes by Micro-Organisms
      • 15:00 Adaptive Environmental Conditioning: Prediction of Environmental Changes by Micro-Organisms 40'
        Speaker: A. MITCHELL
    • 15:40 - 16:20 Network ensembles and the definition of priors in genetic network inference problems
      • 15:40 Network ensembles and the definition of priors in genetic network inference problems 40'
        Speaker: G. BIANCONI
    • 16:20 - 16:40 Coffee break
      • 16:20 Coffee break 20'
    • 16:40 - 17:20 Calibration of a genetic network model for maternal and gap genes in Drosophila
      • 16:40 Calibration of a genetic network model for maternal and gap genes in Drosophila 40'
        Speaker: D. MURARO
        Material: abstract
    • 17:20 - 18:00 Transcriptional regulation: consequences on chromosome structuring and genome organization
      • 17:20 Transcriptional regulation: consequences on chromosome structuring and genome organization 40'
        Speaker: I. JUNIER
  • Friday, 12 June 2009
    • 09:00 - 09:40 Analysis of the spatial organization of the bacterial chromosome
      • 09:00 Analysis of the spatial organization of the bacterial chromosome 40'
        Speaker: O. ESPELI
        Material: abstract
    • 09:40 - 10:20 Spectrally Assigned Localization Microscopy: A new lightoptical approach to study chromosome geometry on the nanoscale
      • 09:40 Spectrally Assigned Localization Microscopy: A new lightoptical approach to study chromosome geometry on the nanoscale 40'
        Speaker: C. CREMER
        Material: abstract
    • 10:20 - 11:00 Coarse-grained Simulations of DNA knotting in conned geometries
      • 10:20 Coarse-grained Simulations of DNA knotting in conned geometries 40'
        Speaker: C. MICHELETTI
        Material: abstract
    • 11:00 - 11:30 Coffee break
      • 11:00 Coffee break 30'
    • 11:30 - 12:10 Viable flux states in metabolic networks: a statistical physics perspective
      • 11:30 Viable flux states in metabolic networks: a statistical physics perspective 40'
        Speaker: A. DE MARTINO
        Material: abstract
    • 12:10 - 12:50 Modeling nucleosome mediated epigenetics and gene regulation
      • 12:10 Modeling nucleosome mediated epigenetics and gene regulation 40'
        Speaker: D. FERNANDEZ
    • 12:50 - 14:20 Lunch
      • 12:50 Lunch 1h30'