Scientific Calendar Event



Description The call for applications is open, please click on "Apply here" on the left, in order to submit your application


The IICII hands-on school, conducted in collaboration with ICGEB in Trieste and co-organized with IFOM and Institute Curie, focuses on Quantitative Biology. The school covers a broad range of biology topics, from genetics to physiology and ecology, attracting participants from different disciplines. Its goal is to foster interdisciplinary collaborations by exposing biology students to the power of mathematics and physics in making quantitative predictions, and students with a background in physics and applied math to quantitative experiments in biological systems.
 
The students, divided into groups, will be introduced to a specific biological problem, formalized and analyzed using mathematical theory. The students will perform experiments to collect data, analyze them and quantitatively test the predictions.
 
 
Topics:
Quantitative Biology
Bioinformatics
Cell Physiology
Experimental Evolution
Ecology


Speakers:
Luca Braga, ICGEB
Marco Cosentino Lagomarsino, IFOM
Giannino Del Sal, ICGEB
Jacopo Grilli, ICTP
Gabriele Micali, Humanitas
Mihael Špacapan, ICTP
Serena Zacchigna, ICGEB

Research abstracts: Applicants are encouraged to submit an abstract for a flash talk. During the application, please make sure to use our templates to format your abstract. Templates are available below for download.
 
 
Grants: A limited number of grants are available to support the attendance of selected participants, with priority given to participants from developing countries. There is no registration fee.
 
Go to day
  • Monday, 8 September 2025
    • 08:30 - 09:00 Registration and administrative formalities
    • 09:00 - 17:00
      • 09:00 Lectures (theory) 3h30'
      • 12:30 Lunch 1h30'
      • 14:00 Lectures (theory) 3h0'
  • Tuesday, 9 September 2025
    • 09:00 - 17:30
      • 09:00 Lectures (theory) 3h30'
      • 12:30 Lunch 1h30'
      • 14:00 Hands-on activities in groups 2h30'
        Hands-on 1
        **Image-based analysis of drug-induced cell competition dynamics**  
        Luca Braga, Giannino del Sal
         
        Cell competition is increasingly recognized as a critical mechanism shaping tissue homeostasis, tumor evolution, and therapeutic response. In the context of cancer, pharmacological pressure can shift the balance between competing cell populations, selectively promoting survival or elimination based on genotype-specific vulnerabilities.  
        Participants will be introduced to the principles and basic techniques of cell-based high-throughput functional screenings. These approaches will be applied to explore how different drugs modulate cell competition dynamics using fluorescence-based quantitative imaging.  
        Participants will quantitatively analyze the interaction between two genetically distinct cell populations exposed to a panel of small molecules, focusing on how drug-induced shifts in proliferation or survival drive clonal dominance. By integrating time-lapse imaging with endpoint assays, the course aims to build a framework for interpreting competitive interactions as a functional and measurable readout of drug responsiveness.  
        The program combines theoretical modules with hands-on activities in imaging, quantification, **and data interpretation.** Attendees will gain insights into how image-based approaches can be leveraged to investigate cell behavior in complex, heterogeneous systems.
         
        Hands-on 2
        **Exploring Metabolic Cross-Feeding in a Synthetic Pseudomonas Consortium**
        Vittorio Venturi, Mihael Špacapan
         
        In this experiment, a synthetic consortium of two _Pseudomonas_ strains is designed to degrade ferulic acid via a metabolically complementary pathway. Ferulic acid, a common phenolic compound in the rhizosphere, is initially degraded by _Pseudomonas_ Strain A, which expresses key enzymes such as feruloyl-CoA synthetase and vanillin dehydrogenase to convert ferulic acid into vanillic acid. This intermediate is then utilized by _Pseudomonas_ Strain B, which carries enzymes like vanillate O-demethylase and protocatechuate dioxygenase to further degrade vanillic acid into protocatechuic acid. Protocatechuic acid subsequently enters the β-ketoadipate pathway, ultimately feeding into central carbon metabolism via TCA cycle intermediates. The consortium reflects metabolic cross-feeding, with each strain performing a distinct step in the degradation pathway. Growth dynamics and substrate conversion can be monitored through OD₆₀₀, CFU counts, FACS and metabolite profiling (i.e. presence of ferulic and/or vanillic acid in the minimal medium), allowing inference on the interdependence, efficiency, and stability of this two-strain system under defined conditions.
      • 16:30 Guest Lecture 1h0'
  • Wednesday, 10 September 2025
    • 09:00 - 17:30
      • 09:00 Lectures (theory) 3h30'
      • 12:30 Lunch 1h30'
      • 14:00 Hands-on activities in groups 2h30'
      • 16:30 Guest Lecture 1h0'
  • Thursday, 11 September 2025
    • 09:00 - 17:30
      • 09:00 Lectures (theory) 3h30'
      • 12:30 Lunch 1h30'
      • 14:00 Hands-on activities in groups 2h30'
      • 16:30 Guest Lecture 1h0'
  • Friday, 12 September 2025
    • 09:00 - 17:00
      • 09:00 Presentation preparation and data analysis 3h30'
      • 12:30 Lunch 1h30'
      • 14:00 Presentations from groups 3h0'
  • Monday, 15 September 2025
    • 09:00 - 17:00
      • 09:00 Lectures (theory) 3h30'
      • 12:30 Lunch 1h30'
      • 14:00 Lectures (theory) 3h0'
  • Tuesday, 16 September 2025
    • 09:00 - 17:30
      • 09:00 Lectures (theory) 3h30'
      • 12:30 Lunch 1h30'
      • 14:00 Hands-on activities in groups 2h30'
        Hands on 3
        **The role of mechanical forces in inhibiting cancer cell proliferation in the heart.**  
        Serena Zacchigna
         
        Both primary and secondary cardiac cancer are extremely rare. While the low incidence of primary tumors is expected, due to the low proliferation rate of cardiomyocytes, the low incidence of metastasis is enigmatic, considering that the heart is highly vascularized and blood constantly flows through it. We recently demonstrated that cancer cells ectopically implanted into the heart grow less than in any other organ. However, the mechanisms that inhibit cancer cell proliferation in the heart remain elusive.  
        Mechanical forces operating in a beating heart have been proposed to blunt the proliferative potential of cardiomyocytes. We hypothesized that the same forces inhibit cancer cell proliferation in the heart. Consistently, our preliminary data indicate that cancer cells grow massively in mechanically unloaded hearts.  
        In this experiment, cancer cells and primary health fibroblasts will be mechanically stimulated using a custom device able to stretch cells in 3D, to mimic a beating heart, at multiple pressures and frequencies, followed by quantification of cancer cell apoptosis and proliferation. We would like to generate a model to infer the best combination of pressure and frquency to use in order to reduce proliferation and induce apoptosis in cancer cells, while minimally affecting the beahvior of healthy cells.
         
        Hands-on 4
        **TBA**
      • 16:30 Guest Lecture 1h0'
  • Wednesday, 17 September 2025
    • 09:00 - 17:30
      • 09:00 Lectures (theory) 3h30'
      • 12:30 Lunch 1h30'
      • 14:00 Hands-on activities in groups 2h30'
      • 16:30 Guest Lecture 1h0'
  • Thursday, 18 September 2025
    • 09:00 - 17:30
      • 09:00 Lectures (theory) 3h30'
      • 12:30 Lunch 1h30'
      • 14:00 Hands-on activities in groups 2h30'
      • 16:30 Guest Lecture 1h0'
  • Friday, 19 September 2025
    • 09:00 - 17:00
      • 09:00 Presentation preparation and data analysis 3h30'
      • 12:30 Lunch 1h30'
      • 14:00 Presentations from groups 3h0'